PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606771.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 215aa    MW: 25017.5 Da    PI: 6.2456
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606771.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.4e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G  +W+++++  g+ R++k+c++rw +yl
   XP_009606771.1 14 RGPWTIEEDHKLMNFILNNGIQCWRLVPKLAGLMRCGKSCRLRWINYL 61
                     89********************************************97 PP

2Myb_DNA-binding52.89.2e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++ E++ +++++ qlG++ W++Ia++++ gRt++++k++w++
   XP_009606771.1  67 RGALSEAEEDMIIKLHSQLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110
                      78889*****************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-21564IPR009057Homeodomain-like
PROSITE profilePS5129415.004961IPR017930Myb domain
SuperFamilySSF466893.96E-2811108IPR009057Homeodomain-like
SMARTSM007172.7E-51363IPR001005SANT/Myb domain
PfamPF002491.2E-111461IPR001005SANT/Myb domain
CDDcd001678.27E-51661No hitNo description
PROSITE profilePS5129427.05362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2565117IPR009057Homeodomain-like
SMARTSM007172.1E-1566114IPR001005SANT/Myb domain
PfamPF002497.0E-1567110IPR001005SANT/Myb domain
CDDcd001672.39E-1171110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MGRQPCCDKI GLKRGPWTIE EDHKLMNFIL NNGIQCWRLV PKLAGLMRCG KSCRLRWINY  60
LRPDLKRGAL SEAEEDMIIK LHSQLGNRWS KIAAHFPGRT DNEIKNHWNT RIKKKLKLLG  120
LDPLTHKPIE QSEKLELPET LNFPQEQQNI QISTSSPSLD EMNESNLEMG SNELFQNSDT  180
FSSDMYNPGL EDPFQNWIDS PIHWNLFDNL DDNFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-53HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755171e-53HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606771.11e-159PREDICTED: protein ODORANT1
RefseqXP_016457257.11e-159PREDICTED: protein ODORANT1-like
SwissprotQ50EX65e-74ODO1_PETHY; Protein ODORANT1
TrEMBLK4BYE91e-111K4BYE9_SOLLC; Uncharacterized protein
STRINGSolyc05g014290.2.11e-111(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-78myb domain protein 40